PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00023522-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 242aa    MW: 27055.6 Da    PI: 6.7817
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00023522-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.65.3e-23142196159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYG K  k+ ++p    rC+ ++C+vkkkver+a+dp ++ +tYeg+Hnhe
  PSME_00023522-RA 142 VEDGYKWRKYGTKLLKNRPYP----RCSESNCNVKKKVEREASDPGLLLTTYEGTHNHE 196
                       58**************98888....5********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-24128197IPR003657WRKY domain
SuperFamilySSF1182902.09E-20135197IPR003657WRKY domain
PROSITE profilePS5081121.792137198IPR003657WRKY domain
SMARTSM007743.0E-24142197IPR003657WRKY domain
PfamPF031062.2E-17143196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MENLKNPDNF YRSLDGNPQY VDRSLDPINS LFCYSPIAAD PNNAIVSQEL PHIYPHDVPE  60
PKIWKDAAWI HDIVRIPSKE VDTIEATACK GPAPQSFPSL EEQPYGEGEI INGESSTKRK  120
KIRKAEKEPI CIFKTSSETN MVEDGYKWRK YGTKLLKNRP YPRCSESNCN VKKKVEREAS  180
DPGLLLTTYE GTHNHESHSV IYYIGSPIIL PQPPGLKPAI VLVNAGGVSS EAGIKFATQQ  240
AF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-19134196975Probable WRKY transcription factor 4
2lex_A5e-19134196975Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6RB882e-41A0A0D6RB88_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.19e-25WRKY DNA-binding protein 28