PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00023691-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 236aa    MW: 27783 Da    PI: 5.7938
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00023691-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.51.5e-152380254
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54
                      + R+++t+eq ++L   Fe+   +ps++e++ ++++l    ++++++V++WF+Nr+++
  PSME_00023691-RA 23 KARWKPTEEQKRILIPKFESgMVKPSTHEIKTITAQLqefgQVEDANVFYWFHNRKYR 80
                      79*****************99***********************************98 PP
2Wus_type_Homeobox79.83.6e-262280260
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60
                       +++RW Pt+eQ +iL   ++sG++ P+++ei+ ita+L+e+G++ed+NVfyWF Nrk R
   PSME_00023691-RA 22 TKARWKPTEEQKRILIPKFESGMVKPSTHEIKTITAQLQEFGQVEDANVFYWFHNRKYR 80
                       689******************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.0211984IPR001356Homeobox domain
SuperFamilySSF466897.01E-91984IPR009057Homeodomain-like
SMARTSM003890.00182188IPR001356Homeobox domain
PfamPF000463.3E-132380IPR001356Homeobox domain
CDDcd000860.001922380No hitNo description
Gene3DG3DSA:1.10.10.601.6E-42480IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MLIRPLHTVT SSANEERSWH KTKARWKPTE EQKRILIPKF ESGMVKPSTH EIKTITAQLQ  60
EFGQVEDANV FYWFHNRKYR IFNRVERTEK NTKAIINVAS NTADSLYNTG ESYSSYLLED  120
PFFTQDDPFF THQDRFFHTG EWYSSYDPFF TQDDPFFTHN DNPFFIHQQD FHMQMNEEMS  180
NDQCSSMQAV ATAAGVFNEG TFADTTGTIF SYLICPVRYL VYYVYSAAYL VCRVLF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-19homeobox-3