PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00023693-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 218aa    MW: 25956.9 Da    PI: 6.088
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00023693-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.91.3e-161774254
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54
                      ++R+++tkeq ++L   Fe+   +ps++e+++++++l    ++++++V++WF+Nr+++
  PSME_00023693-RA 17 KPRWKPTKEQKRILILKFESgMEKPSRHEIKKITAQLqefgQVEDANVFYWFHNRKYR 74
                      89*****************99***********************************98 PP
2Wus_type_Homeobox803.2e-261674260
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60
                       +++RW Pt+eQ +iL   ++sG+  P+++ei++ita+L+e+G++ed+NVfyWF Nrk R
   PSME_00023693-RA 16 TKPRWKPTKEQKRILILKFESGMEKPSRHEIKKITAQLQEFGQVEDANVFYWFHNRKYR 74
                       689******************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.36E-91378IPR009057Homeodomain-like
PROSITE profilePS500719.7821378IPR001356Homeobox domain
SMARTSM003897.0E-41582IPR001356Homeobox domain
PfamPF000464.2E-141774IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.4E-61774IPR009057Homeodomain-like
CDDcd000866.75E-51774No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDGTSSANEE RSWHKTKPRW KPTKEQKRIL ILKFESGMEK PSRHEIKKIT AQLQEFGQVE  60
DANVFYWFHN RKYRIFNRVD RTEKNTKAII NVASNTGDSL YNTGESYSSY VLEGPFFTQD  120
DPFFTHQDRF FHTGEWYSSY DPFFTQDDPF VTYHDNSFFI HQEDFHMQMY EEMSNDQCSS  180
MQAVSDTTGT ILSYLIFPVR YLVYYVYSPA YLVCRVLV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.14e-21homeobox-3