PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00023694-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 193aa    MW: 22605.1 Da    PI: 4.9958
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00023694-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.8e-095372654
                      -HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox 26 saeereeLAkkl....gLterqVkvWFqNrRak 54
                      s++e+++++++l    ++++++V++WF+Nr+++
  PSME_00023694-RA  5 SRHEIKKITAQLqefgQVEDANVFYWFHNRKYR 37
                      789****************************98 PP
2Wus_type_Homeobox48.91.6e-163372660
  Wus_type_Homeobox 26 tPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60
                         +++ei++ita+L+e+G++ed+NVfyWF Nrk R
   PSME_00023694-RA  3 KASRHEIKKITAQLQEFGQVEDANVFYWFHNRKYR 37
                       66899****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000462.1E-6537IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MVKASRHEIK KITAQLQEFG QVEDANVFYW FHNRKYRIFN RVDRTEKNTK AIINVASNTG  60
DSLYNTGESY SSYVLEGPFF TQDDPFFTHQ DRFFHTGEWY SSYDPFFTQD DPFFTHHDNP  120
FFIHQEDFHM QMNEEMSNDQ CSSMQAIATA AGVFNEGTLA DTTGTIFSYL ISPVRYLVYY  180
VYSPAYLVCR VLV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-12homeobox-3