PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00023695-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 316aa    MW: 36402.6 Da    PI: 5.5885
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00023695-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.65.7e-1559116254
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54 
                       ++R+++tkeq ++L   Fe+   +ps++e++ ++++l    ++++++V++WF+Nr+++
  PSME_00023695-RA  59 KPRRKPTKEQKRILIPKFESgMVKPSRNEIKTITAQLqefgQVEDANVFYWFHNRKYR 116
                       89*****************99***********************************98 PP
2Wus_type_Homeobox73.92.5e-2458116260
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60 
                        +++R  Pt+eQ +iL   ++sG++ P+++ei+ ita+L+e+G++ed+NVfyWF Nrk R
   PSME_00023695-RA  58 TKPRRKPTKEQKRILIPKFESGMVKPSRNEIKTITAQLQEFGQVEDANVFYWFHNRKYR 116
                        689******************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-544116IPR009057Homeodomain-like
PROSITE profilePS500719.71855120IPR001356Homeobox domain
SuperFamilySSF466898.32E-955119IPR009057Homeodomain-like
SMARTSM003890.001357124IPR001356Homeobox domain
PfamPF000461.3E-1259116IPR001356Homeobox domain
CDDcd000861.08E-459116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDNMKSKPRK SWTSMFKVKP STSDNEGYGS SNSSAISVQT PCYEGTSSAN EERSWHKTKP  60
RRKPTKEQKR ILIPKFESGM VKPSRNEIKT ITAQLQEFGQ VEDANVFYWF HNRKYRIFNR  120
VEGTEKNTKA IINVASNTAD SLYNTGESYS SYVLEDPFFT QDDPFFTHQD RFFHTGEWYS  180
SYDPFFTQDD PFFTHHDNPF FIHQEDFHMQ MNEEMSNDQC SSMQAVATAA GVFNEGGSFS  240
YEHLIPVPIN KIAIEVPVGS INVRDAFGEN AVLLHSIGEP VLVNQWGFTF ECLQQGAEYY  300
VVYLMPKKIS ITLYFE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5LMH91e-83D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-20homeobox-3