PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00023765-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 333aa    MW: 36660.1 Da    PI: 9.474
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00023765-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.7e-09129149526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        C++f++ G C++Gd C FaHg
  PSME_00023765-RA 129 ACPDFRK-GSCRRGDACEFAHG 149
                       7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.67E-5123153IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6124150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807125151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5129151IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-7129149IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.493159183IPR000571Zinc finger, CCCH-type
SMARTSM0035614159182IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MISRPTVTAW PRDLKKKLLS IDSVPEQPRL FRFPPQSPAE AAGCRQQAQR IDDVGSSLAA  60
FHKYLPSNNE DEASWPAVDA YSCDEFQMYE FKVRRCMRGR SHDWTKCPFA HPGRKRDEEI  120
PRFHYSGTAC PDFRKGSCRR GDACEFAHGV FECWLHPARY RTQPCKDGRN CRRRVCFFAH  180
MPEQLRLFPG ASVGSRNGFQ SKRHEGSNLR HAVSFDGALS VAGYDGGGSS PVNHFGNGGG  240
YFDGPQTGGS SPRGYLCSKS NLSCTSKFQI SLPTSTLVGH AHSPPPLSPP LSPSGSPRDS  300
SANWTYGVSN SSPVGAANKP LHHKFLIVGG RSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6770290.0EF677029.1 Picea sitchensis clone WS02760_G11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024378892.14e-81zinc finger CCCH domain-containing protein 35-like isoform X2
TrEMBLB8LMK41e-165B8LMK4_PICSI; Uncharacterized protein
STRINGPP1S177_93V6.14e-80(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.17e-69C3H family protein