PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00023817-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 463aa    MW: 52180 Da    PI: 4.7124
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00023817-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-1784134155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       + y+GVr++  +g+WvAeIr+p   + r  r +lg+f +ae+Aa a+++a++ ++g
  PSME_00023817-RA  84 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFSSAEDAALAYDQAARVMYG 134
                       56*****999.**********8...3.35**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.00E-3084143No hitNo description
PfamPF008476.7E-1284134IPR001471AP2/ERF domain
SMARTSM003801.1E-3485148IPR001471AP2/ERF domain
PROSITE profilePS5103221.28585142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3085143IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2085143IPR016177DNA-binding domain
PRINTSPR003671.0E-98697IPR001471AP2/ERF domain
PRINTSPR003671.0E-9108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MSSSSFRINT VKDKHVATEP QRRRKVRSRN HGCTTVVETL AKWQELNSQV ESSKDGAKRL  60
RKAPAKGSKK GCMKGKGGPD NGRCNYRGVR QRTWGKWVAE IREPNRGSRL WLGTFSSAED  120
AALAYDQAAR VMYGSCARLN LPDIIRNGGG IAETDQRYGL EICLDVEDAK SDCPFKAEKN  180
AIVPDSALDL PVKSDTKECT LLHRLVPKDE PQDADGRNTF DSSQTTSSRF KDEPQGELPS  240
ATVSRGLSNS EVQPMSIKPE PNESTEPLDS FQDIQLQDLD EMFDPEELLK MMNVNENKGE  300
LSEADTQMFN SLCYNSWPQE ELTDEVGLPS CVSPPSPTLQ YLQFQSLDDR LLGNSLLDEG  360
EQLRLDDRNF KDLGQLQQFN LDSFQQSENQ PVKHYVRSDD KALNAKVLDD GHFASFPYPY  420
NNQGYQSVDM RTSQVLCPES MLTGDLQEMQ DRRIFEDIYQ GYV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1985142260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-1985148569ATERF1
3gcc_A4e-1985148569ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1162310.0BT116231.1 Picea glauca clone GQ03714_D04 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.23e-32DRE-binding protein 2A