PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00023962-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

WOX

Protein Properties

Length: 348aa MW: 40300.5 Da PI: 5.5501

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00023962-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	50.6	3.4e-16	56	113	2	54
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54 ++R+++tkeq ++L Fe+ +ps++e++ ++++l ++++++V++WF Nr+++ PSME_00023962-RA 56 KPRWKPTKEQMRILTPKFESgMVKPSRHEIKTITAQLqefgQVEDANVFYWFRNRKYR 113 89***************99*********************************98 PP
2	Wus_type_Homeobox	84.7	1.1e-27	55	113	2	60
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60 +++RW Pt+eQ++iL+ ++sG++ P+++ei+ ita+L+e+G++ed+NVfyWF Nrk R PSME_00023962-RA 55 TKPRWKPTKEQMRILTPKFESGMVKPSRHEIKTITAQLQEFGQVEDANVFYWFRNRKYR 113 689******************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-5	41	113	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.831	52	117	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.03E-9	52	117	IPR009057	Homeodomain-like
SMART	SM00389	5.8E-4	54	121	IPR001356	Homeobox domain
Pfam	PF00046	8.3E-14	56	113	IPR001356	Homeobox domain
CDD	cd00086	1.88E-4	56	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MQSKPRQSWT SMFKVKPSTS DNQGYGSSNS SAISVQRPCY EGTSSANEER SWHKTKPRWK 60 PTKEQMRILT PKFESGMVKP SRHEIKTITA QLQEFGQVED ANVFYWFRNR KYRIINRVER 120 TEKNTKAIIN VANNTADSLY YTGESYSSYV VEDPFFTQDD PFFTQDDPFF THQDRFFHTG 180 EWYSSYDPFF THHDNPFFIH QEDFHMQMNE EMSNDQCSSM QAVATATGVF NEGTGESFSY 240 EHLIPVQINK IPVEVPVGSI NVRDAFGENA VLLDSIGEPD LVNEWGFTLE CLQQGAEYYV 300 DSVWRNDDGN HGNQNYHGYK KKCMRTAGHV QVAYLWIPTS SLEHPYYG

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MQSKPRQSWT SMFKVKPSTS DNQGYGSSNS SAISVQRPCY EGTSSANEER SWHKTKPRWK  60
PTKEQMRILT PKFESGMVKP SRHEIKTITA QLQEFGQVED ANVFYWFRNR KYRIINRVER  120
TEKNTKAIIN VANNTADSLY YTGESYSSYV VEDPFFTQDD PFFTQDDPFF THQDRFFHTG  180
EWYSSYDPFF THHDNPFFIH QEDFHMQMNE EMSNDQCSSM QAVATATGVF NEGTGESFSY  240
EHLIPVQINK IPVEVPVGSI NVRDAFGENA VLLDSIGEPD LVNEWGFTLE CLQQGAEYYV  300
DSVWRNDDGN HGNQNYHGYK KKCMRTAGHV QVAYLWIPTS SLEHPYYG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D5LMH9	5e-88	D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	9e-23	homeobox-3