PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00023963-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 300aa    MW: 35523.2 Da    PI: 5.9973
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00023963-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.33.5e-1559116254
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54 
                       ++R++++keq ++L   Fe+   +ps++e++ ++++l    ++++++V++WF+Nr+++
  PSME_00023963-RA  59 KPRWKPKKEQKRILIPKFESgMVKPSRNEIKTITAQLqefgQVEDANVFYWFHNRKYR 116
                       89*****************99***********************************98 PP
2Wus_type_Homeobox78.68.3e-2658116260
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60 
                        +++RW P++eQ +iL   ++sG++ P+++ei+ ita+L+e+G++ed+NVfyWF Nrk R
   PSME_00023963-RA  58 TKPRWKPKKEQKRILIPKFESGMVKPSRNEIKTITAQLQEFGQVEDANVFYWFHNRKYR 116
                        689******************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-444116IPR009057Homeodomain-like
SuperFamilySSF466894.13E-855120IPR009057Homeodomain-like
PROSITE profilePS500718.89255120IPR001356Homeobox domain
SMARTSM003890.002757124IPR001356Homeobox domain
PfamPF000468.2E-1359116IPR001356Homeobox domain
CDDcd000860.0031659116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDNMKSKPRQ SWTSMFKVKP STSDNQGYGS SNSSAISVQR PCYEGTSSAN EERSWHKTKP  60
RWKPKKEQKR ILIPKFESGM VKPSRNEIKT ITAQLQEFGQ VEDANVFYWF HNRKYRIFNR  120
VERTEKNTKA IINVASNTAD SLYNTGKWYS SYVLEDPFFT QDDPFFTHQD RFFHTGEWYS  180
SYDPFFTQDD PFFTHQDRFF HTGEWYSSYD PFFTQDDPFF THHDNRFFIH QEDFHMQMNE  240
EMSNDQCSSM QAVATAAGVL NEGTFADTTG TIFSYPRSIF SLLYLLCSIF SSVEYYYEYE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16369PKKEQKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5LMH94e-48D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.15e-23homeobox-3