PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00024237-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 186aa    MW: 21613.7 Da    PI: 6.5253
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00024237-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.0004165108350
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 
                        +   +E+ RR+r++    +L +llP       +Kl+     e+A++Y
  PSME_00024237-RA  65 GSQVVAEQLRRKRMKCLCTQLESLLPMT----TPKLDRCGLYEEAINY 108
                       566789********************96....3555555555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-761126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.99162112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-763125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MAFHGFPSNS NSQQCTPPSQ ADCQVIASRK SPFEVDLDSL QELKDLQEIV WRDVDQMTIK  60
DTTRGSQVVA EQLRRKRMKC LCTQLESLLP MTTPKLDRCG LYEEAINYNT KLEEDLRQLK  120
RKRDRLLEIQ SGKTANKNID LKVAVEIYDR EVIISITGQR RPRYLWKILE ELETHGLDVE  180
NSQLFT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NYK81e-75A9NYK8_PICSI; Uncharacterized protein