PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00024308-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 246aa    MW: 28224.5 Da    PI: 6.6668
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00024308-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY919.4e-29145202259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYG+K vk+s++pr+Y+rC+ ++C vkk ver+ +d+ vv++tY g+H+he
  PSME_00024308-RA 145 EDGYKWRKYGKKFVKNSPNPRNYFRCSDSNCDVKKTVERDPRDKGVVITTYLGRHTHE 202
                       8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-30132204IPR003657WRKY domain
SuperFamilySSF1182902.48E-26136204IPR003657WRKY domain
PROSITE profilePS5081128.564139204IPR003657WRKY domain
SMARTSM007741.6E-31144203IPR003657WRKY domain
PfamPF031068.0E-23145202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MANVDPRIGH FQAAFKALSK EQAQLLQEAN CSLHISEGAD EFEPSDFLDL EEDFNDSCKT  60
EDEDDRAYNF NIVNTGPSSQ REYAHSLTSN PPPCIQGFHL DHNPTVIKTP DQSPETINPK  120
KCRKRKAERA LKYAFLTRSE IDILEDGYKW RKYGKKFVKN SPNPRNYFRC SDSNCDVKKT  180
VERDPRDKGV VITTYLGRHT HESPCVIYYI GKPEMLQPPH QSTGSTVLQH LSPVCNYVRE  240
SFEQHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-211372051078Probable WRKY transcription factor 4
2lex_A4e-211372051078Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.11e-29WRKY DNA-binding protein 23