PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00024309-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 264aa    MW: 30431 Da    PI: 6.6695
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00024309-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY39.98.3e-131802201959
                       SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY  19 efprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +  ++Y+rC+ ++C vkk ver+ +d+ vv++tY g+H+he
  PSME_00024309-RA 180 KWRKNYFRCSDSNCDVKKTVERDPRDKGVVITTYLGRHTHE 220
                       45679***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.5E-14164222IPR003657WRKY domain
SuperFamilySSF1182902.62E-15167222IPR003657WRKY domain
PROSITE profilePS5081115.985170222IPR003657WRKY domain
SMARTSM007743.7E-13175221IPR003657WRKY domain
PfamPF031061.1E-8180220IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
SSLTLERVQY AGSLTYPNWF IRFCNFRREV TAMANVDPRI GHFQAAFKAL SKEQIQLLQE  60
ANCSLHISEE AEEFEPSDFL DLEEDFNNSC KTEDADDRAY NFNIVKTGPS SQREYAHSLP  120
SNPPCIQGLH LDHNPTVIQT PDQSPETINP KKSRKRKAEQ ALKYAFLTRS QTDILEDGYK  180
WRKNYFRCSD SNCDVKKTVE RDPRDKGVVI TTYLGRHTHE SPCVIYYIGK PEMLQLPHQT  240
TGSTVLQHLS PVRNYVPESF EKHQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.11e-19WRKY DNA-binding protein 51