PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00024334-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 227aa    MW: 26092.5 Da    PI: 8.1525
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00024334-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.6e-121560247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      g+WT+ Ed +l +++  +G g+W+  +++ g++R++k+c+ rw  y
  PSME_00024334-RA 15 GAWTKKEDMILSEYISIHGDGRWRNLPQKAGLRRSGKSCRIRWMHY 60
                      79*****************************************977 PP
2Myb_DNA-binding45.41.8e-1467112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + + +el+++ +++lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00024334-RA  67 RGNISDDAEELIIRMHRLLGNR-WSLIAGRLP-GRTANEVKNHWNTHL 112
                       566777779*************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.963961IPR017930Myb domain
SuperFamilySSF466896.24E-2412108IPR009057Homeodomain-like
SMARTSM007173.0E-91363IPR001005SANT/Myb domain
PfamPF002499.8E-111560IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-191568IPR009057Homeodomain-like
CDDcd001672.64E-71660No hitNo description
PROSITE profilePS5129424.42162116IPR017930Myb domain
SMARTSM007173.2E-1366114IPR001005SANT/Myb domain
PfamPF002491.9E-1268112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2169116IPR009057Homeodomain-like
CDDcd001671.04E-975112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVRSTYCSKE GLNCGAWTKK EDMILSEYIS IHGDGRWRNL PQKAGLRRSG KSCRIRWMHY  60
HRPDIKRGNI SDDAEELIIR MHRLLGNRWS LIAGRLPGRT ANEVKNHWNT HLKKKLFMVP  120
DRCNNIDALK FCQIQETRNS SKTCCKLFVN DSMSEDYSER NIASRIMADA YNLAETEAGQ  180
QCLDSDHFAG NAAATVLEEL LFDSNKQSSP DCKQSYFSTG FELEDIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027331892.19e-60myb-related protein Zm38-like
TrEMBLA0A167V9011e-67A0A167V901_PICAB; Transcription factor MYB30
STRINGXP_004507986.11e-58(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-55myb domain protein 6