PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00024384-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 344aa MW: 37616.1 Da PI: 8.7616

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00024384-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.3	1.3e-08	216	262	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +Er RR++i +++ L++l+P + sk Ka++L + ++Y++sLq PSME_00024384-RA 216 RSLAERVRREKISERMKFLQDLVPGC----SKATGKAAMLDEIINYVQSLQ 262 5789*******************9....7779**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.23E-16	209	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.30E-9	209	266	No hit	No description
PROSITE profile	PS50888	14.983	211	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-16	214	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.7E-6	216	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-10	217	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MLERAARLSC FGVGGGSLNL SESAGAPFHR SVIDNSAMSR IPRPNMAELT KLYDTSLSKE 60 EVCVAETGVR KAGTLSRSST PGHGTSGNES DDAEVNTSHE ESSSSDQNTS EAAPNAFNGR 120 KRKQMQKDKG KDFASLQAEK ETQITEAVDG LKGMKYKTVE GVKEKDDVKY KVEQNASTKT 180 GEGNPKQAKD NIQTFEPPKE DYIHVRARRG QATNSRSLAE RVRREKISER MKFLQDLVPG 240 CSKATGKAAM LDEIINYVQS LQRQVEFLSM KLAAVNPRME FNVEGILAKD MLQSQGSSPT 300 MVFASNTSTS YPQLHQPQQG LVQIGTEGHG IVNQAEALRR TINA

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MLERAARLSC FGVGGGSLNL SESAGAPFHR SVIDNSAMSR IPRPNMAELT KLYDTSLSKE  60
EVCVAETGVR KAGTLSRSST PGHGTSGNES DDAEVNTSHE ESSSSDQNTS EAAPNAFNGR  120
KRKQMQKDKG KDFASLQAEK ETQITEAVDG LKGMKYKTVE GVKEKDDVKY KVEQNASTKT  180
GEGNPKQAKD NIQTFEPPKE DYIHVRARRG QATNSRSLAE RVRREKISER MKFLQDLVPG  240
CSKATGKAAM LDEIINYVQS LQRQVEFLSM KLAAVNPRME FNVEGILAKD MLQSQGSSPT  300
MVFASNTSTS YPQLHQPQQG LVQIGTEGHG IVNQAEALRR TINA

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT113151	0.0	BT113151.1 Picea glauca clone GQ03326_F21 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LLM2	1e-108	B8LLM2_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	1e-61	bHLH family protein