PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00024450-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 313aa    MW: 33781.8 Da    PI: 6.8978
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00024450-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.28.4e-15129175354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++h+e+ErrRR+riN+ + +Lr+llP+      +K +Ka+ L +++e++k+L
  PSME_00024450-RA 129 KSHSEAERRRRERINTHLGTLRSLLPST-----TKTDKASLLAEVIEHLKDL 175
                       79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.685126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-12129175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-14130184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-14130186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-13132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.54E-5139178No hitNo description
Gene3DG3DSA:3.30.70.2605.3E-6213262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSGSGSSGDG QFSPWSVPPI QWTSTGGMDQ RLISCMAPNK EAPSSSYSGF HCGPLQFSYD  60
RLRESGAAVV YGSKSGVGFN GRECGMLQHR QLLANGHGGL FMDGFPAEAN VTKMTNQEII  120
DAKALAASKS HSEAERRRRE RINTHLGTLR SLLPSTTKTD KASLLAEVIE HLKDLKRQAL  180
EIAEESAVPT ETDELTVDAV ASCADGKSLV KASVCCDDRP ELLSDLIKTL RSLGLRTTKA  240
EITTLGGRVK HELLLDASND DNTDYGTPST SCVHDALKAV MERQNSEGSA TANKRQRLNP  300
FSSIHHIHDG RSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0474362e-66FJ047436.1 Pinus taeda isolate 4627 anonymous locus 0_11790_02 genomic sequence.
GenBankFJ0474372e-66FJ047437.1 Pinus taeda isolate 4623 anonymous locus 0_11790_02 genomic sequence.
GenBankFJ0474382e-66FJ047438.1 Pinus taeda isolate 4630 anonymous locus 0_11790_02 genomic sequence.
GenBankFJ0474392e-66FJ047439.1 Pinus taeda isolate 4637 anonymous locus 0_11790_02 genomic sequence.
GenBankFJ0474402e-66FJ047440.1 Pinus taeda isolate 4625 anonymous locus 0_11790_02 genomic sequence.
GenBankFJ0474412e-66FJ047441.1 Pinus taeda isolate 4622 anonymous locus 0_11790_02 genomic sequence.
GenBankFJ0474422e-66FJ047442.1 Pinus taeda isolate 4626 anonymous locus 0_11790_02 genomic sequence.
GenBankFJ0474432e-66FJ047443.1 Pinus taeda isolate 4621 anonymous locus 0_11790_02 genomic sequence.
GenBankFJ0474442e-66FJ047444.1 Pinus taeda isolate 4631 anonymous locus 0_11790_02 genomic sequence.
GenBankFJ0474452e-66FJ047445.1 Pinus taeda isolate 4636 anonymous locus 0_11790_02 genomic sequence.
GenBankFJ0474462e-66FJ047446.1 Pinus taeda isolate 4632 anonymous locus 0_11790_02 genomic sequence.
GenBankFJ0474472e-66FJ047447.1 Pinus taeda isolate 4635 anonymous locus 0_11790_02 genomic sequence.
GenBankFJ0474482e-66FJ047448.1 Pinus taeda isolate 4633 anonymous locus 0_11790_02 genomic sequence.
GenBankFJ0474492e-66FJ047449.1 Pinus taeda isolate 4634 anonymous locus 0_11790_02 genomic sequence.
GenBankFJ0474502e-66FJ047450.1 Pinus taeda isolate 4629 anonymous locus 0_11790_02 genomic sequence.
GenBankFJ0474512e-66FJ047451.1 Pinus taeda isolate 4624 anonymous locus 0_11790_02 genomic sequence.
GenBankFJ0474522e-66FJ047452.1 Pinus taeda isolate 4620 anonymous locus 0_11790_02 genomic sequence.
GenBankJQ2617412e-66JQ261741.1 Pinus radiata isolate 4638 hypothetical protein (0_11790_02) gene, 3' UTR.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265277.18e-71PREDICTED: transcription factor bHLH30-like
RefseqXP_010265278.18e-71PREDICTED: transcription factor bHLH30-like
RefseqXP_022878424.15e-71transcription factor bHLH30-like
SwissprotQ9S7Y12e-58BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0C9QX511e-124A0A0C9QX51_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_1935_1396 transcribed RNA sequence
STRINGXP_010265276.13e-70(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]