PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00024511-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 295aa    MW: 32742.8 Da    PI: 8.1674
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00024511-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.56.3e-15164214454
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       + +++++q    ee F knr p  ++++ LA +l+L  rqV vWFqNrR +
  PSME_00024511-RA 164 KLRLSRNQYALWEESFLKNRVPESKQKQALALQLNLHPRQVEVWFQNRRVR 214
                       556899999999*************************************98 PP
2HD-ZIP_I/II90.52e-29163250290
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                       kk+rls++q +l EesF +++  e+++K++la +L+l+prqv+vWFqnrR Rt  kq E d+e Lkr+ ++l+e+n++L+ke eeLr +
  PSME_00024511-RA 163 KKLRLSRNQYALWEESFLKNRVPESKQKQALALQLNLHPRQVEVWFQNRRVRTEPKQSELDCELLKRCNESLVEQNRKLHKELEELR-A 250
                       9****************999999***************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-14155214IPR009057Homeodomain-like
PROSITE profilePS5007115.127158218IPR001356Homeobox domain
SuperFamilySSF466892.14E-15159215IPR009057Homeodomain-like
SMARTSM003894.4E-8160222IPR001356Homeobox domain
CDDcd000868.68E-11163214No hitNo description
PfamPF000463.1E-12165214IPR001356Homeobox domain
SMARTSM003402.3E-14218261IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDQNCSRGLS LGLGLSIGTG ATTSDKDHEN VSNRNVNGPP VELDLFPLAP LLPPDHSGCR  60
TLPWEKTLHG IDHGGGDSDR SAGKAKVPVS QPSDANKIPV SCYSNEHAGT INLSSSNSTV  120
DSNATNPVSA DHMFKRKQDA SEQNGRVCSW AINDVAEEEG CSKKLRLSRN QYALWEESFL  180
KNRVPESKQK QALALQLNLH PRQVEVWFQN RRVRTEPKQS ELDCELLKRC NESLVEQNRK  240
LHKELEELRA LEMSSPLRRA ATLTMCPSCK TVSAADNNSH FTLAKARSMF MRRAQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NKN42e-79A9NKN4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.19e-36HD-ZIP family protein