PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00024512-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 290aa    MW: 32409.6 Da    PI: 8.8265
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00024512-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.56.2e-15159209454
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       + +++++q    ee F knr p  ++++ LA +l+L  rqV vWFqNrR +
  PSME_00024512-RA 159 KLRLSRDQYALWEESFLKNRVPESKQKQALALQLNLRPRQVEVWFQNRRVR 209
                       557899999999*************************************98 PP
2HD-ZIP_I/II91.41.1e-29158245290
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                       kk+rls++q +l EesF +++  e+++K++la +L+l+prqv+vWFqnrR Rt  kq E d+e Lkr+ ++l+e+n++L+ke eeLr +
  PSME_00024512-RA 158 KKLRLSRDQYALWEESFLKNRVPESKQKQALALQLNLRPRQVEVWFQNRRVRTEPKQSELDCELLKRCNESLVEQNRKLHKELEELR-A 245
                       9****************999999***************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-14151209IPR009057Homeodomain-like
PROSITE profilePS5007115.24153213IPR001356Homeobox domain
SuperFamilySSF466896.84E-15154210IPR009057Homeodomain-like
SMARTSM003898.5E-8155217IPR001356Homeobox domain
CDDcd000861.99E-10158209No hitNo description
PfamPF000462.6E-12160209IPR001356Homeobox domain
SMARTSM003402.1E-13213256IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSGLCLGLGL SIGTGATTRD KDHENVSNRN VNGPPVELDL FPLAPLLPPD HSGCRTLPWE  60
KTLNGIDRGG RDSDRSAGKA NVPVSQPSDA NKIPVSCYSN EHAGTINLSP SNSTVDSNAT  120
NPVSADHMFK RKRNATEQNG RVCSWTINDV AEEEGCSKKL RLSRDQYALW EESFLKNRVP  180
ESKQKQALAL QLNLRPRQVE VWFQNRRVRT EPKQSELDCE LLKRCNESLV EQNRKLHKEL  240
EELRALEMSS LLRRAATLTM CPSCKTVSAA DNNSHFTLAK ARSMFMRRAQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NKN44e-77A9NKN4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.15e-35HD-ZIP family protein