PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00024656-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 59aa MW: 6703.76 Da PI: 7.1826

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00024656-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.2	4.4e-09	14	46	1	32
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32 +g+W++eEd +l+d++++ G+g +W + ++++g PSME_00024656-RA 14 KGPWSPEEDSKLKDYINKCGTGgNWLALPEKIG 46 79***********************98888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-10	5	43	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.36E-7	9	44	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.458	9	45	IPR017877	Myb-like domain
Pfam	PF00249	1.6E-7	14	46	IPR001005	SANT/Myb domain
CDD	cd00167	2.83E-4	16	46	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 59 aa Download sequence Send to blast
MGRAPCCDND KMKKGPWSPE EDSKLKDYIN KCGTGGNWLA LPEKIGMAFF INLIEWFHA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269\|PubMed:26124109, ECO:0000269\|PubMed:26371322}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269\|PubMed:24517883, ECO:0000269\|PubMed:26371322}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004288285.1	2e-21	PREDICTED: transcription factor RAX3
Swissprot	Q9FKL2	4e-22	MYB36_ARATH; Transcription factor MYB36
TrEMBL	A0A2J6KKG5	9e-21	A0A2J6KKG5_LACSA; Uncharacterized protein
TrEMBL	A0A2P6RB18	5e-20	A0A2P6RB18_ROSCH; Putative transcription factor MYB-HB-like family
STRING	evm.model.supercontig_129.59	9e-21	(Carica papaya)
STRING	XP_004288285.1	6e-21	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-24	myb domain protein 36

Publications ? help Back to Top
Fernández-Marcos M, et al. Control of Arabidopsis lateral root primordium boundaries by MYB36. New Phytol., 2017. 213(1): p. 105-112 [PMID:27891649]