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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PSME_00024659-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 226aa MW: 25273.1 Da PI: 5.2923 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 26.8 | 1.2e-08 | 4 | 25 | 24 | 46 |
HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46
W+tIa+ ++ gRt++++k++w++
PSME_00024659-RA 4 WSTIAAQLP-GRTDNDIKNYWNT 25
*********.***********97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 15.347 | 1 | 31 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 5.55E-7 | 4 | 35 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 3.0E-11 | 4 | 31 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 6.32E-6 | 4 | 27 | No hit | No description |
| Pfam | PF00249 | 3.4E-6 | 4 | 25 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 226 aa Download sequence Send to blast |
MDLWSTIAAQ LPGRTDNDIK NYWNTRLKKK VLLGNRKDCQ ARRLAVAKQE SNNEQSYAMS 60 EFITSASPNI YCSEQAKDMN IDMHVPYFNL GTEIISQMFE KNCGSTSITE SNSSSEPAPT 120 QSNHQQIQLD QEVFDHSSCL GELRRSPGEI RVDNPSNKNM AMISTSSPIQ AFNYINAAQV 180 QQSAVHHEYV SEAASHILYE TPSATPVLIR LADQREVAIL DQSTSL |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | D5ABB6 | 3e-53 | D5ABB6_PICSI; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G65790.1 | 6e-15 | myb domain protein 68 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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