PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00024660-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 82aa    MW: 9484.88 Da    PI: 9.5198
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00024660-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.86.1e-091446132
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32
                      +g W+ eEd +l+++++++G+g +W t ++++g
  PSME_00024660-RA 14 KGHWSLEEDIKLKEYIEKYGTGgNWITLPQKVG 46
                      789****************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-10544IPR009057Homeodomain-like
SuperFamilySSF466893.35E-7846IPR009057Homeodomain-like
PROSITE profilePS500906.748948IPR017877Myb-like domain
PfamPF002494.6E-71446IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MGRTTCCDKA NVKKGHWSLE EDIKLKEYIE KYGTGGNWIT LPQKVGKSSF LDYGIHVEIK  60
HRLFLFFNSI VQYSFSRPPS SQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020693136.24e-21transcription factor RAX3-like
SwissprotQ9FKL22e-21MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A2J6KKG52e-20A0A2J6KKG5_LACSA; Uncharacterized protein
STRINGBra006811.1-P7e-20(Brassica rapa)
STRINGXP_002523702.16e-21(Ricinus communis)
STRINGA0A087GBQ17e-20(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.19e-24myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]