PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00024677-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 546aa    MW: 58688.3 Da    PI: 7.03
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00024677-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.3e-12476521655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk Lq
  PSME_00024677-RA 476 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDEAVDYIKFLQ 521
                       689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.408470520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-17473536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.93E-13474525No hitNo description
Gene3DG3DSA:4.10.280.102.2E-16475535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9476521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-14476526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MRAAENVRLA SYKLCSSQSA AENAKLPPKS LSRSISNGFD MGCGYSEKGE QGLMQQVDES  60
NRHSASTGHS TTSTHMDVNL STQVSSGLMR YRSAPSTFLA SLVDEAGDYL PRIAGSQEPD  120
HAVIARYFSA DSSSLTSDSS SGVIQSHGLD RSAAQKEPKM FSRMNTGANA GLQSAGSGNE  180
DVGKHRLASI LENGPEPEPE PEPEEVLSQD SFCNSQMMYR AQDSRSGMEN SYRMNPLYCN  240
PLVSSGGRIN NLPLTAVKSN LVRHSSSPAG LLSRLAAGDG RGLYENGYSI GAVRNMGNIS  300
SENGSSVAPN RLGSQMNFMR QGSSTSGLSS QLSDMGLPQV VDKLNMPVGS SADSLGGSSS  360
DDGSLSNGNG VQRYISSFPV VSWDDAVIVS DGFAGMQNGA SFSARKRVRD LNGKMMPSLN  420
LAESQKGDPS SHLPEGLNHQ FSLTKSPSEI AMEKLLQDSV PCKIRAKRGC ATHPRSIAER  480
VRRTRISERM RKLQELVPNM DKQTNTADML DEAVDYIKFL QTQVQELSEN RPKCNCSCKM  540
NASETT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1038770.0BT103877.1 Picea glauca clone GQ02803_I06 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ9SQ791e-113Q9SQ79_PINTA; Helix-loop-helix protein 1A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-47bHLH family protein