PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00024989-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 211aa    MW: 23688.2 Da    PI: 7.661
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00024989-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.11e-05611021055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + RR+++ +++  L++l+P +    sk   Ka +L + ++Y++sLq
  PSME_00024989-RA  61 KVRREKMSERMKFLQDLVPGC----SKVTGKAVMLDEIINYVHSLQ 102
                       67******************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.8251101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-461107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-1361120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1361120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-861106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MLAMEKITNL TINLYILLNS GQFTMEKSTN NAHITEAVYG LKGMKYKTVE GVKEKDDVKY  60
KVRREKMSER MKFLQDLVPG CSKVTGKAVM LDEIINYVHS LQRQVQFLSM KLAAVNPRME  120
FNVEGTLAKD MLQSQGSSST MVFAFDTSTS YPQLHHPQQG LVQIGTEGHG VVNQTEPLRR  180
TINAQIACID GYGDVNAQLS HVWDNELQSV V
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1131511e-155BT113151.1 Picea glauca clone GQ03326_F21 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654187.17e-61PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_010654195.17e-61PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_010654202.17e-61PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_010654208.17e-61PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_019076890.17e-61PREDICTED: transcription factor bHLH49 isoform X1
SwissprotQ9CAA92e-45BH049_ARATH; Transcription factor bHLH49
TrEMBLB8LLM21e-68B8LLM2_PICSI; Uncharacterized protein
STRINGVIT_01s0010g00740.t019e-61(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.27e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]