PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00025037-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 305aa    MW: 33842.7 Da    PI: 9.0828
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00025037-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.4e-07150200555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+ +Er+RRd+ +   ++L +ll +  + + +K + ++ L +A+++I++Lq
  PSME_00025037-RA 150 HKLVERQRRDKKKALCSTLISLLAEEIRKGRTKHTISDKLLEAINHIRHLQ 200
                       99***********************99***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.953145199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-6149216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-7149220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-5150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.63E-6150203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MTRFFTHFHG NIDTDDIQIQ TPTKSSKFME LGTCVYDDAL ATVVFDALST KRPHDYGMLR  60
TASLGPVVQL DLTSADDSSP AVTQCLQEFV GNFGDPAQTL TCKSSANSLL NSRNPLSPPT  120
RSNRRKKAVA GGRGHDLEAS ADCIGNSDVH KLVERQRRDK KKALCSTLIS LLAEEIRKGR  180
TKHTISDKLL EAINHIRHLQ AKLIELEKKR DEQKATVQPF FGSSSVFKTL KTVQVRPSNV  240
LDKFQTIRVS KFGLCVQVTV NTFKNQIEFS SLLMVLEEAE VDVVSATVSA INDKVFYSIH  300
SKVIC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.16e-12bHLH family protein