PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00025117-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 349aa MW: 38627.8 Da PI: 7.6195

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00025117-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.1	4.2e-10	174	222	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +E++RRd+++ ++L +llP+++ ++ K + ++ L +A+++I++Lq PSME_00025117-RA 174 HKLVEKQRRDKMKALCSTLISLLPEDF--RKIKHTISDKLLEAINHIRHLQ 222 99*********************75..9999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.293	169	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-9	173	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-10	173	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.6E-7	174	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.48E-11	174	225	No hit	No description
SMART	SM00353	0.0022	175	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MEDLLWTSYP DQYPYMARSS SYSESAAFFT HFHGNIDTHD IQIQTPTKSS KFMEPGTCVY 60 DDALATVVFG ALSTKRPHDY GMLGTASLGP VVQLDLTTAD DSSPAVTQCL QEFVGNFGDP 120 AQTLTCKSSA NSLLNSSNPL SPPTRSNRRK KAVAGGKGHD LEASGDCIGN SDVHKLVEKQ 180 RRDKMKALCS TLISLLPEDF RKIKHTISDK LLEAINHIRH LQAKLIELEK KRDEQKATVK 240 PFFGSSSVFK TLQTSQVRPS NVRDKFQTIR VSKFGPAVQV TVNTFTNEIE FSSLLMVLEE 300 AEVDIVSATV SAINDRVFYS IHSKISVFRN FDSAVLQGRI DQLMNGNLP

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MEDLLWTSYP DQYPYMARSS SYSESAAFFT HFHGNIDTHD IQIQTPTKSS KFMEPGTCVY  60
DDALATVVFG ALSTKRPHDY GMLGTASLGP VVQLDLTTAD DSSPAVTQCL QEFVGNFGDP  120
AQTLTCKSSA NSLLNSSNPL SPPTRSNRRK KAVAGGKGHD LEASGDCIGN SDVHKLVEKQ  180
RRDKMKALCS TLISLLPEDF RKIKHTISDK LLEAINHIRH LQAKLIELEK KRDEQKATVK  240
PFFGSSSVFK TLQTSQVRPS NVRDKFQTIR VSKFGPAVQV TVNTFTNEIE FSSLLMVLEE  300
AEVDIVSATV SAINDRVFYS IHSKISVFRN FDSAVLQGRI DQLMNGNLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	2e-15	bHLH family protein