PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00025187-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 249aa    MW: 27583.4 Da    PI: 7.2757
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00025187-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15e-19149200256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g++ AeIrdp  n  ++r++lg+f taeeAa a+++a+ +++g+
  PSME_00025187-RA 149 HYRGVRQRP-WGKFTAEIRDPARN--SARVWLGTFNTAEEAALAYDHAAFRIRGA 200
                       7********.**********8544..5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-31148207IPR001471AP2/ERF domain
CDDcd000183.68E-28149207No hitNo description
SMARTSM003803.5E-35149213IPR001471AP2/ERF domain
PfamPF008471.3E-13149199IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22149208IPR016177DNA-binding domain
PROSITE profilePS5103223.92149207IPR001471AP2/ERF domain
PRINTSPR003674.0E-11150161IPR001471AP2/ERF domain
PRINTSPR003674.0E-11173189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MENGNTIDRM EINFCDWSES TGKIAAGESM NMLEFIRHHL LEVDDEIEMN IDVHQAPLNY  60
PSSSPSSISF SSTVNWDHIN ATATATASDS CENSDKRSTS EDNENEITQQ YSSSSSLSAV  120
IRRELAINVK AQPQEKKSGE MNQMSRARHY RGVRQRPWGK FTAEIRDPAR NSARVWLGTF  180
NTAEEAALAY DHAAFRIRGA KALLNFPLAF ASNSVNRPTV GHMAHKRKRG MAEEGNASSR  240
RSSGRGGGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-33145208164ATERF1
3gcc_A5e-33145208164ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NMA31e-61A9NMA3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.14e-26ethylene responsive element binding factor 2