PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00025347-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family CO-like
Protein Properties Length: 318aa    MW: 35677 Da    PI: 7.5021
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00025347-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.19.7e-101155442
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      r C+ ++e+++ ++C  ++ +lC+ C ++ H        H++v+l
  PSME_00025347-RA 11 RPCDACGEQRAGWYCSADDAHLCNACDTQVHTAnavarrHERVSL 55
                      78*****************************55788888998875 PP
2CCT67.34e-23268310143
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                       Rea+++RY+eKr++R+F KkirY++RK +Ae+RpR+KGrFvk+
  PSME_00025347-RA 268 REARVMRYREKRQSRLFYKKIRYHVRKLNAENRPRMKGRFVKR 310
                       9****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.438855IPR000315B-box-type zinc finger
SMARTSM003363.8E-9855IPR000315B-box-type zinc finger
PfamPF006435.7E-81155IPR000315B-box-type zinc finger
CDDcd000213.49E-91155No hitNo description
PROSITE profilePS5101715.666268310IPR010402CCT domain
PfamPF062031.7E-17268310IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MATGIEGNGV RPCDACGEQR AGWYCSADDA HLCNACDTQV HTANAVARRH ERVSLTTTTS  60
AVRFPAAPSA CWSSSWLRKR SRSGRRHGRS NPGAEQPLGL SIAMTDVVAE DNADEDQEPL  120
SWLWSSDDVD TPLSWLCNHR VKSEPNEAVD YVKTELEPEG LLDLNLDFCL LNEREIDNKE  180
VHDPTKVRLQ LNYDEVLSAW SDRGSPWAQV HPIMYPNSDL AGHGARLEFG LVPDLASLGC  240
RQSGRELIGQ VPVMIHGGDG ERPRAGGREA RVMRYREKRQ SRLFYKKIRY HVRKLNAENR  300
PRMKGRFVKR TGDGLFVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2U8RMJ91e-40A0A2U8RMJ9_GINBI; CONSTANS-like protein 6
STRINGEFJ336161e-37(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-19B-box type zinc finger protein with CCT domain