PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00025348-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family CO-like
Protein Properties Length: 320aa    MW: 35790.2 Da    PI: 7.4816
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00025348-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.17.5e-081152439
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      r C+ ++e+++++ C  ++  lC++C ++ H        H++
  PSME_00025348-RA 11 RPCDACGEQQARWCCSADDARLCNTCDTQVHTAnpvarrHER 52
                      78*****************************55667667776 PP
2CCT644.6e-22270312143
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                       Rea ++RY+eKr++R F KkirY++RK +Ae+RpR+KGrFvk+
  PSME_00025348-RA 270 REACVMRYREKRRSRMFYKKIRYHVRKLNAENRPRMKGRFVKR 312
                       99***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.8E-8855IPR000315B-box-type zinc finger
PROSITE profilePS501199.414855IPR000315B-box-type zinc finger
CDDcd000213.84E-61153No hitNo description
PfamPF006434.0E-61153IPR000315B-box-type zinc finger
PROSITE profilePS5101715.487270312IPR010402CCT domain
PfamPF062031.1E-16270312IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MATGIEGSGV RPCDACGEQQ ARWCCSADDA RLCNTCDTQV HTANPVARRH ERVILTTTTS  60
VVRFPAAPSA CWSSSWLQKR SHSGRRHGRS NPGAEQPLGS SIAMTDAVAE DNADEEPEPL  120
SWHWSSDDVD APLSWLCNHR VKSEPSEAVD YVKTELEPEG LLDLNLDFCL LKEREIEKTK  180
IHDPTKVRLK LNYDEVLSAW SDRGSSWAQV HPIMYPNSDL AGHEAGLEFG LVPDLASLGC  240
GQPSGREQAF GQVAVMTHVG DGQRPRAGGR EACVMRYREK RRSRMFYKKI RYHVRKLNAE  300
NRPRMKGRFV KRTGDESFVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280296RRSRMFYKKIRYHVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2U8RMJ92e-38A0A2U8RMJ9_GINBI; CONSTANS-like protein 6
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.15e-24B-box type zinc finger protein with CCT domain