PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00025428-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 373aa MW: 41616.2 Da PI: 6.6189

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00025428-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.4	1.1e-12	186	229	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR ++N+ + Lr l+P+ + K++K +iL A+ YI+ Lq PSME_00025428-RA 186 VAERKRRIKVNELLMSLRALVPNiS------KMDKTSILADAIAYIQTLQ 229 68*******************66......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.557	179	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-15	181	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.11E-11	182	233	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.7E-15	185	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.9E-14	185	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-10	186	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MNAEFGFISA TASYLEMNGS DISSCSTDIS QTLFGIINHD NIYGLDDFDD ALFTESTESL 60 GFPSLEGSGS KIKMESILDS EDRLHLKSCH CSSEPSCSCT TVPEGYLKKF CSKETFSPVA 120 DHDTYSFFKN IQNTSSATQD REPASTQYNI AVKDIARRSK RKCSPGCSQK GRASPPEVSW 180 ASKNMVAERK RRIKVNELLM SLRALVPNIS KMDKTSILAD AIAYIQTLQK KVKETEADRV 240 SSHQPNTLQC SISSANQLIS RSRIESVEMG KYEKKNQAQQ DFKILELDVD VTKVEGKTFL 300 IRMYCKKEAG LILQLTRALD FLELDIISSS HMALNGYILS TVLAEVERWD LMQVNQIRKN 360 IVEAASHFGF QAA

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MNAEFGFISA TASYLEMNGS DISSCSTDIS QTLFGIINHD NIYGLDDFDD ALFTESTESL  60
GFPSLEGSGS KIKMESILDS EDRLHLKSCH CSSEPSCSCT TVPEGYLKKF CSKETFSPVA  120
DHDTYSFFKN IQNTSSATQD REPASTQYNI AVKDIARRSK RKCSPGCSQK GRASPPEVSW  180
ASKNMVAERK RRIKVNELLM SLRALVPNIS KMDKTSILAD AIAYIQTLQK KVKETEADRV  240
SSHQPNTLQC SISSANQLIS RSRIESVEMG KYEKKNQAQQ DFKILELDVD VTKVEGKTFL  300
IRMYCKKEAG LILQLTRALD FLELDIISSS HMALNGYILS TVLAEVERWD LMQVNQIRKN  360
IVEAASHFGF QAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.2	5e-23	bHLH family protein