PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00025595-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 304aa    MW: 34208.1 Da    PI: 5.448
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00025595-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-13189232755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + Er+RR+++N+ +  Lr l+P+      +K++K++i+  A++YI+sLq
  PSME_00025595-RA 189 ATERKRRRKVNEFLMSLRALVPSI-----TKMDKSSIVSDAIDYIQSLQ 232
                       67*********************7.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.837182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-16187249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-15188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-13189246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-11189232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-12191236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEGKYVGGSS LETASYLEMG VVGISSNSID PLHTLLGMES FGLDDFEDSM FTPSSERLGF  60
SGLESSGSTT INMDSILESE DRWSLKYLQC ISQSPYRWNN LREGNLQPLS SNENYGPTTD  120
HTYMPNKNIQ NNEPASALCS IVRSKRNCSS MLITFGQNED HYADKVTNIV DKRGHESPSN  180
VSWALRNLAT ERKRRRKVNE FLMSLRALVP SITKMDKSSI VSDAIDYIQS LQKQIRDREV  240
SIPSLHSNTA QRSRSNTSEL ISSNTIWSVD EGDYEKKPTK SQAQQGFKII EVSLDRLFLD  300
ISYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191195RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.31e-14bHLH family protein