PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00025597-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 428aa    MW: 46061.3 Da    PI: 4.4033
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00025597-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.7e-30214272259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers +dp+++++tY+++Hnh+
  PSME_00025597-RA 214 SDMWAWRKYGQKPIKGSPYPRGYYRCSSSkGCCARKQVERSCTDPSMLIVTYTSDHNHP 272
                       69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-30208274IPR003657WRKY domain
SuperFamilySSF1182901.7E-25211274IPR003657WRKY domain
SMARTSM007749.2E-35213273IPR003657WRKY domain
PROSITE profilePS5081131.789214274IPR003657WRKY domain
PfamPF031064.9E-25215272IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
LAGGAWEKMV LEDHCCNEIK AEEMGTGFQL PIRSLSPSSV LECSSSMAFR DAASTPGLMS  60
FDPGSVDADA SNSYPIRRCA ASCLGAVAAL YPDKQEKCNQ INELGEGEFM FGTSIVKQES  120
ENQLELVQPA SFVYGNELVE ALQASSNLGE ETNSKSCDLP GSPAKRDSPD RSTGDDCDAK  180
AVPCSKRRKM VQKKVVCVPV GPADGRQKND GPPSDMWAWR KYGQKPIKGS PYPRGYYRCS  240
SSKGCCARKQ VERSCTDPSM LIVTYTSDHN HPWPANRANS NSNSGLPAKQ SQSQLEASPI  300
VSEKCCSISQ EVVSIPEESA ACINSSDNLF SLIINSPGRL EQRVISSLEI QADEPLAFVQ  360
DVAELCISGT TNLEDDDFYA DLGELPDSSA IFSTRGSFFD DDETTNSGGI DRFSFLSVSG  420
SCGLLGTM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-21193274679Disease resistance protein RRS1
5w3x_D5e-21193274679Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1017690.0BT101769.1 Picea glauca clone GQ01312_N15 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R4G31e-123A0A0D6R4G3_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.15e-47WRKY DNA-binding protein 65