PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00025742-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 483aa    MW: 54100.4 Da    PI: 7.157
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00025742-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000582850123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y C++C+k+F +   L  H+r H
  PSME_00025742-RA 28 YFCKICSKRFVSGRALGGHMRAH 50
                      78*******************98 PP
2zf-C2H211.40.00099134152321
                       ETTTTEEESSHHHHHHHHH CS
           zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                       C  Cgk Fs++ ++  H++
  PSME_00025742-RA 134 CDLCGKEFSSWKSMFGHMK 152
                       *****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.48E-72850No hitNo description
PROSITE profilePS5015710.0142855IPR007087Zinc finger, C2H2
SMARTSM003550.0272850IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
PfamPF139127.4E-83050IPR007087Zinc finger, C2H2
SuperFamilySSF576671.48E-7127154No hitNo description
PROSITE profilePS5015710.076132159IPR007087Zinc finger, C2H2
SMARTSM003550.0055132154IPR015880Zinc finger, C2H2-like
PfamPF139126.9E-7133156IPR007087Zinc finger, C2H2
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
SuperFamilySSF576678.68E-7301324No hitNo description
PfamPF139122.8E-8301326IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471302329IPR007087Zinc finger, C2H2
SMARTSM003550.033302324IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280304324IPR007087Zinc finger, C2H2
SuperFamilySSF576678.68E-7380407No hitNo description
PfamPF139129.4E-11384409IPR007087Zinc finger, C2H2
PROSITE profilePS501579.556385412IPR007087Zinc finger, C2H2
SMARTSM003550.55385407IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280387407IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MSTVDILYPS SQVMEVLKKQ ERKHALSYFC KICSKRFVSG RALGGHMRAH APASIAADTF  60
TQTESQKIKR PRASDHKSME EKEKDEEGLD SNGSNLMYAL RKNPKRSWRF ADRDYSFMLG  120
HDFDSKSIDS SINCDLCGKE FSSWKSMFGH MKCHSDTHQD SSDAHLEESW QHETQDNEAE  180
ESESEIANPR EKSSRFHKWK KGKRSRRPRH VIQCISPCEQ FGSETINEVE EMAMCLVMLA  240
NEVSTVQKPL VQVGAEEPGS VDLKLPNTGS QISKCMRKKL RYKKIDGDAV LYADDGVKKA  300
RYKCITCNKV FHSRQALGGH RTSHNKIKGS FLQTEEENES PEEEITDEEF ITGLDSYQEA  360
RSKERTKNSC VKLASLSGKK SLRVHECSIC HRVFDSGQAL GGHKRGHSSS AGASDTLSTI  420
SSNKDSSIQQ QQMPARVELL DLNLPAPVDD DSDAGNFNKL GGNAVDFDGA SYDQTHSLPS  480
LQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RQJ11e-122A0A0C9RQJ1_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_25048_2114 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.15e-24C2H2-like zinc finger protein