PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00025743-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 505aa    MW: 56599.2 Da    PI: 6.6882
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00025743-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000612850123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y C++C+k+F +   L  H+r H
  PSME_00025743-RA 28 YFCKICSKRFVSGRALGGHMRAH 50
                      78*******************98 PP
2zf-C2H214.20.00012134152321
                       ETTTTEEESSHHHHHHHHH CS
           zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                       C  Cgk Fs++ +L  H++
  PSME_00025743-RA 134 CDLCGKEFSSWKSLFGHMK 152
                       ******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.08E-82850No hitNo description
PROSITE profilePS5015710.0142855IPR007087Zinc finger, C2H2
SMARTSM003550.0272850IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
PfamPF139127.8E-83050IPR007087Zinc finger, C2H2
SuperFamilySSF576673.08E-8127154No hitNo description
PROSITE profilePS5015710.596132159IPR007087Zinc finger, C2H2
SMARTSM003550.003132154IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-7133156IPR007087Zinc finger, C2H2
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
SuperFamilySSF576674.84E-6307330No hitNo description
PfamPF139122.2E-8307332IPR007087Zinc finger, C2H2
SMARTSM003550.13308330IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055308335IPR007087Zinc finger, C2H2
PROSITE patternPS000280310330IPR007087Zinc finger, C2H2
SuperFamilySSF576674.84E-6386413No hitNo description
PfamPF139124.7E-12390415IPR007087Zinc finger, C2H2
PROSITE profilePS501578.808391413IPR007087Zinc finger, C2H2
SMARTSM003550.54391413IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280393413IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MNTVDILYPS SQVMEVLKKQ ERKHALSYFC KICSKRFVSG RALGGHMRAH APASIGADTL  60
TETEFQKSKR KRASNHKSME EREKDEEDLD SNGSNLMYAL RKNPKRSWRF ADRDYSFLLG  120
HDFDSKSIDS SINCDLCGKE FSSWKSLFGH MKCHSDTHQD ISDAHLEESE LWEHETQDDE  180
AEESESDAEI EIAHPRQKSS RFHKWKKGKR SRRPRHSIQH INPCEQFGSE TINEVEEMAM  240
CLVMLANEVS TVQKPLVQVG AEEPGSVDLK LPNTDSQLSK CMRKKLRYKK IDGDVVLYAD  300
DGVKKARYKC ITCNKVFHSH QALGGHRTSH KKIKGSFLQT EEENESPEEE ATDEELITGS  360
DSYQEPRSKE RTKNSCVKLV SLSGKKSLRV HECSICHRVF GSGQALGGHK RGHWSSAGAS  420
DSLSTISSNK DSSIQQQQMP ARVELLDLNL PAPVDDDSDG GNFNKLGGNA VDFDGASYDQ  480
THSLPSFLAA LVDGPLPETG VIIPI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RQJ11e-131A0A0C9RQJ1_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_25048_2114 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-24C2H2-like zinc finger protein