PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00025980-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 333aa MW: 37496.7 Da PI: 6.1068

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00025980-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	400.3	4.3e-123	110	325	1	216
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp+aflgp+calwdc+rpaqg++w+qdycs fh tla neg+pg++p+l p+gidlkdg+lfaalsak+q k vgip+cegaatakspwna PSME_00025980-RA 110 PPPAAFLGPRCALWDCSRPAQGTKWCQDYCSDFHMTLASNEGAPGMRPILHPGGIDLKDGPLFAALSAKTQEKAVGIPKCEGAATAKSPWNAY 202 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfd+ +lege++rewlffdkpr afesgnrkq slpdysgrg hesrkqv+k+fgglkrsyymdpqps++fewh+yeyein++da+alyr+e PSME_00025980-RA 203 ELFDMYVLEGESMREWLFFDKPRWAFESGNRKQCSLPDYSGRGLHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHIYEYEINDCDACALYRIE 295 ***************************************************************************************** PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlt 216 lk+v +kk++kgkv d+l+dlq++lg+l+ PSME_00025980-RA 296 LKMVCSKKNTKGKVGGDPLVDLQHQLGKLS 325 **************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MSVLSSLKWF RNHEQQLYLR KRGALVVKNY IAVLEVIEAN IEHQEKNNYV QTSEQLPPNL 60 VEGLEVTSGL EGGQINFHLD YIPAVQPIFT LIGEEETSPV FNGPQPGLCP PPAAFLGPRC 120 ALWDCSRPAQ GTKWCQDYCS DFHMTLASNE GAPGMRPILH PGGIDLKDGP LFAALSAKTQ 180 EKAVGIPKCE GAATAKSPWN AYELFDMYVL EGESMREWLF FDKPRWAFES GNRKQCSLPD 240 YSGRGLHESR KQVIKDFGGL KRSYYMDPQP STQFEWHIYE YEINDCDACA LYRIELKMVC 300 SKKNTKGKVG GDPLVDLQHQ LGKLSPEFSW VAK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260370.1	1e-129	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-119	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A1U8A0G4	1e-128	A0A1U8A0G4_NELNU; transcription factor VOZ1
STRING	XP_010260370.1	1e-129	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-121	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]