PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00026031-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 347aa MW: 39066.2 Da PI: 8.8517

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00026031-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.9	5.7e-11	162	210	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r+ h Er+RR+++N++++ Lr++lP + +K +Ka++ ++A++++ +L PSME_00026031-RA 162 QREIHILSERQRREEMNEKLSMLRSILPRL-----TKKDKASTITHAIKHLTEL 210 688999*********************9.....9************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.62E-15	160	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.958	161	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-8	162	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.48E-12	162	215	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.1E-12	162	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.8E-10	167	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
KGMDHRWGIV LNEDQIDQPV PFGEMGEFGM PCLIDQAAGC TFAMSEPSQY NMSSMLNNIG 60 HSSSGFIQQH ADIGWSESVI QAAPVESANY GSSQIHGFNN LGSYSAFQGS QAYTNLTPWS 120 NSRVAGVNSS VPPRQQRHHP QQNMMMRSTP CTRKAPHRNP TQREIHILSE RQRREEMNEK 180 LSMLRSILPR LTKKDKASTI THAIKHLTEL EEKVKSLRAC KAIKKKQCKA EKAHSHPIEK 240 RTEARADNNR SIGTFSKQFG GDSEDDKLCK IEIQNLGTHA ILKILSPWSS RLFLRAHKAL 300 DECRVDVLQS IMTKHGGNAV YYFTFEFNSD TPSIDKIMSI FEEASSF

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

KGMDHRWGIV LNEDQIDQPV PFGEMGEFGM PCLIDQAAGC TFAMSEPSQY NMSSMLNNIG  60
HSSSGFIQQH ADIGWSESVI QAAPVESANY GSSQIHGFNN LGSYSAFQGS QAYTNLTPWS  120
NSRVAGVNSS VPPRQQRHHP QQNMMMRSTP CTRKAPHRNP TQREIHILSE RQRREEMNEK  180
LSMLRSILPR LTKKDKASTI THAIKHLTEL EEKVKSLRAC KAIKKKQCKA EKAHSHPIEK  240
RTEARADNNR SIGTFSKQFG GDSEDDKLCK IEIQNLGTHA ILKILSPWSS RLFLRAHKAL  300
DECRVDVLQS IMTKHGGNAV YYFTFEFNSD TPSIDKIMSI FEEASSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22770.1	7e-13	bHLH family protein