PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026510-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 66aa    MW: 7337.51 Da    PI: 7.1803
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026510-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26047.64.7e-154564799
            DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99
                      +++p ++r+da+++++ eA ar++dPvyG++g+i +lq +++ql+++la+++ 
  PSME_00026510-RA  4 QNVPVDKRSDAVRCMIIEASARVKDPVYGCTGIICQLQLRVSQLQSQLAKTQG 56
                      789999*******************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.91158IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-14455IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MDYQNVPVDK RSDAVRCMII EASARVKDPV YGCTGIICQL QLRVSQLQSQ LAKTQGDLHS  60
IVSMLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104136.12e-17LOB domain-containing protein 1
SwissprotQ9LQR08e-15LBD1_ARATH; LOB domain-containing protein 1
SwissprotQ9SK089e-15LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A392N9C53e-17A0A392N9C5_9FABA; LOB domain protein (Fragment)
STRINGXP_010104136.16e-17(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-10LBD family protein