PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00026511-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 128aa MW: 14767.1 Da PI: 9.3014

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00026511-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	63.4	5.6e-20	76	122	1	47
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaCk+ rr+C+++C++apyfp+++++++a+vhk+FGa+nvlk+l+ PSME_00026511-RA 76 PCAACKMRRRRCTEKCPFAPYFPQSHAESYAAVHKIFGANNVLKMLQ 122 7********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.992	75	128	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-19	76	122	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MKGCSEIAHR LYHLSKHDLT HRLFSTRIDK ANFHDISAGC TQYLKLASLQ DINTISRTEM 60 QSHYTQDEEK VKLISPCAAC KMRRRRCTEK CPFAPYFPQS HAESYAAVHK IFGANNVLKM 120 LQVHVIIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-14	75	121	10	56	LOB family transfactor Ramosa2.1
5ly0_B	9e-14	75	121	10	56	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	3e-18	LOB domain-containing protein 13