PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026513-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NF-YC
Protein Properties Length: 239aa    MW: 26661.7 Da    PI: 10.6139
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026513-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1252.9e-395314212101
             NF-YC  12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101
                        ++dfknh+ Pl+rikki+kadedv +is eaP+l++kace+file+tl sw+h+ee+k r l+k+dia a+trt ifdf + i+pr el
  PSME_00026513-RA  53 VVNDFKNHQKPLTRIKKIMKADEDVFIISVEAPILFAKACEMFILEFTLCSWNHTEEKKWRMLQKNDIAGAITRTGIFDFPMHIMPRGEL 142
                       579***********************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.03E-2047132IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.1E-2755125IPR009072Histone-fold
PfamPF008089.8E-1463124IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSFFRHNRAI RTKYCRKACL RAIRVKQLLP LHLWACKGRW DSSHRRSQVS ARVVNDFKNH  60
QKPLTRIKKI MKADEDVFII SVEAPILFAK ACEMFILEFT LCSWNHTEEK KWRMLQKNDI  120
AGAITRTGIF DFPMHIMPRG ELKEEGLGLG FSKGGIPLEG NGWLPFRHDG KTLSNSSRPI  180
GHVYVATTGT SLWNATSSSP AHVVASSTSS SSIATATSTN AGWTNLWESA LAAPTPHAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-40561391295NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_006493757.13e-44(Citrus sinensis)
STRINGXP_006422281.13e-44(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.21e-40nuclear factor Y, subunit C4