PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026524-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 297aa    MW: 33240.6 Da    PI: 7.0268
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026524-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.7e-1792152257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       ++R+ ++++q+++Le+ F++   +p +ee++++  +l    ++++ +V++WFqNr+a+ k+
  PSME_00026524-RA  92 KTRWHPKPDQIQILEAIFNSgMVNPPREEIKRIRGHLeefgHVEDVNVFYWFQNRKARVKR 152
                       89*****************99*************************************997 PP
2Wus_type_Homeobox106.81.3e-3491153264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        a+tRW P+p+Qi+iLe++++sG+++P++eei+ri+ +Lee+G++ed NVfyWFQNrkaR ++k
   PSME_00026524-RA  91 AKTRWHPKPDQIQILEAIFNSGMVNPPREEIKRIRGHLEEFGHVEDVNVFYWFQNRKARVKRK 153
                        689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.07488153IPR001356Homeobox domain
SuperFamilySSF466897.45E-1290156IPR009057Homeodomain-like
SMARTSM003899.7E-690157IPR001356Homeobox domain
CDDcd000862.55E-692154No hitNo description
Gene3DG3DSA:1.10.10.603.3E-892160IPR009057Homeodomain-like
PfamPF000462.5E-1592152IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKVLQRRRDL LEKISCIAYL PPFAQYEFQK ALAHYVHEIE VLSIASNFKF FSVEIAISRR  60
VDLIKNIFHT EGALSQNYVP ERERERIMPV AKTRWHPKPD QIQILEAIFN SGMVNPPREE  120
IKRIRGHLEE FGHVEDVNVF YWFQNRKARV KRKRQLQDEE KSESRAKVAR TLSSSSSIST  180
ATSVQSQPVT IVNEAPSSSA GPAISSFAGH HCDQQVTQKT STTQYSNIQP IGAGGSTGGI  240
LNEGGVPEDP ISIDDNSVIT VIVNDIPMQV PREPINFGAF FGDDALLLDS SGHSVQI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4119531e-73JX411953.1 Picea abies WUSCHEL homeobox protein WOX8D (WOX8D) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR9R8679e-81R9R867_PICAB; WUSCHEL homeobox protein WOX8D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.14e-29homeobox-3