PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026529-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 231aa    MW: 25002.8 Da    PI: 9.9577
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026529-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.23e-081421811155
                       HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +RR+ri +++  L+el+P +      K +Ka++L + ++Y+k Lq
  PSME_00026529-RA 142 QRRERIAERMKALQELVPIC-----NKIDKAAMLDEIIDYVKFLQ 181
                       8******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.821131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-8137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-13142190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.44E-9142185No hitNo description
PfamPF000101.2E-5142181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MKFNNQRPFT KSLMGSGQGM MTGILEDPFL ASRLQQQLSN ENLLGPCEST RSMALQLGTT  60
GGMQAFHSTG GPGLLAVIRP PLSGSAVAAA AADTITIQSP TQSWWPPYVG LNPLILGQGR  120
VDTTRLLGKR LRDDQARLTN TQRRERIAER MKALQELVPI CNKIDKAAML DEIIDYVKFL  180
QLQVKVLSMS RLGGAGAGGP LVADISADAS NSMRLSRIKK GHENICRDDE G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-24LJRHL1-like 3