PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00026647-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 309aa MW: 34844.2 Da PI: 4.472

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00026647-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	215	2e-66	184	309	1	126
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp aflgp+calwdc+r aqgs+w+qdycs+fh ++alneg+pg+ p+l p+gidlkdgllf al ak k gip+cegaat+kspwna+ PSME_00026647-RA 184 PPPKAFLGPECALWDCPRLAQGSDWCQDYCSNFHGMVALNEGPPGMGPILLPGGIDLKDGLLFVALGAKNVVKYFGIPKCEGAATKKSPWNAP 276 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkq 126 elfdl +l+ge irewlffdkprr fesgnrkq PSME_00026647-RA 277 ELFDLFFLQGEVIREWLFFDKPRRDFESGNRKQ 309 ******************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MFTDLQQVRK ESRVNDALVL EEQVHLLLRE CKAELHEESP TTSMLEASLC SSDLSCDMWR 60 LLQLHEEEDD ATSILAAPYN SKLQLNENTL EAANPSSFQE AIQPNEMRKD FYVDHANAEA 120 QNINGTSRSK NIHTESLLQN TDESLEAATQ MNRYFDHNLC LSLDPEVEEE HIPKFQGPCP 180 RISPPPKAFL GPECALWDCP RLAQGSDWCQ DYCSNFHGMV ALNEGPPGMG PILLPGGIDL 240 KDGLLFVALG AKNVVKYFGI PKCEGAATKK SPWNAPELFD LFFLQGEVIR EWLFFDKPRR 300 DFESGNRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003529356.1	1e-102	transcription factor VOZ1
Refseq	XP_028241113.1	1e-102	transcription factor VOZ1-like
Swissprot	Q9SGQ0	9e-90	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A445JZB4	1e-101	A0A445JZB4_GLYSO; Transcription factor VOZ1
TrEMBL	I1KLR2	1e-101	I1KLR2_SOYBN; Uncharacterized protein
STRING	GLYMA07G32374.2	1e-101	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	6e-81	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]