PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026677-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 352aa    MW: 38896 Da    PI: 6.2838
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026677-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.25.3e-2817115194
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C++ C+++p++      ++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+ G+vg++ ++++ql+
  PSME_00026677-RA  17 SCNGCRVLRKGCSETCIIRPCLqwiknEESQANATVFLAKFYGRAGLMNLISAGPEDLRPAIFRSLLYEACGRMVNPIFGSVGLLCSGNWQLC 109
                       6*********************9998767889************************************************************* PP

            DUF260  89 qlkael 94 
                       q+++e 
  PSME_00026677-RA 110 QAAVES 115
                       **9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.47316122IPR004883Lateral organ boundaries, LOB
PfamPF031955.7E-2317114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MVHFDRLLSE LLVMRMSCNG CRVLRKGCSE TCIIRPCLQW IKNEESQANA TVFLAKFYGR  60
AGLMNLISAG PEDLRPAIFR SLLYEACGRM VNPIFGSVGL LCSGNWQLCQ AAVESILKGC  120
PIHPIIVDSS GIQMPTERCN TNPSVRSTLM ETITNELHKV KTKGRFKRKK GTAKDLSLNN  180
SDAEDLVASQ VFNLRGRRCY PGEFQAAAAM DGTANNLVSS DSSSESLEHF DDPRNHKEAE  240
IEGNITKGMD LGIVNGNSCN DQNDHKTVKE SVFEISHPQA AYLEDMQPIK QEYESTVSDN  300
TEVKLELELT LSSQGPATHA SEKCHRNTHW NSCMEHSDEP KITSLGLGLS QA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158169KVKTKGRFKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006842288.16e-79LOB domain-containing protein 40
TrEMBLA0A3G6J9E00.0A0A3G6J9E0_PINTA; ASYMMETRIC LEAVES 2-like protein 37
STRINGERN039632e-78(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.12e-66LOB domain-containing protein 40