PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026688-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 74aa    MW: 8674.01 Da    PI: 10.0208
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026688-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53e-083673137
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-H CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtl 37
                      +g W+++Ed +l ++v + G   +W+ +a+  gk+R+l
  PSME_00026688-RA 36 KGLWSPDEDHKLTNYVMRKGLTgCWNYVAKQAGKHRSL 73
                      678*****************999**********99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.8643172IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.0E-93272IPR009057Homeodomain-like
SuperFamilySSF466894.21E-63271IPR009057Homeodomain-like
PfamPF002498.0E-63672IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MKENRSGEMW FTVRKDQEVW EMEGVPPTPS IPKLRKGLWS PDEDHKLTNY VMRKGLTGCW  60
NYVAKQAGKH RSLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.18e-11myb domain protein 83