PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026873-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 276aa    MW: 30656.6 Da    PI: 9.6353
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026873-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16.2e-2054104155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++y+GVr+++ +g+Wv+eIr+p++   + r++lg+f+t+e+Aa+a++ a+ +l+g
  PSME_00026873-RA  54 PRYRGVRRRS-WGKWVSEIREPKK---KNRIWLGSFDTPEMAARAYDVAAFYLKG 104
                       68*****887.**********854...59***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-1354104IPR001471AP2/ERF domain
CDDcd000181.09E-3054115No hitNo description
SMARTSM003806.4E-3855119IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2055113IPR016177DNA-binding domain
PROSITE profilePS5103224.05255113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-3055114IPR001471AP2/ERF domain
PRINTSPR003673.9E-105667IPR001471AP2/ERF domain
PRINTSPR003673.9E-107894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MRSYNIDSKK YAFKTEYGQV HSACLGAQMV GTIRKQDKAV SSASQESRLK MQYPRYRGVR  60
RRSWGKWVSE IREPKKKNRI WLGSFDTPEM AARAYDVAAF YLKGKKHALL NFPELMQDHQ  120
LPQPISLSPR HIQAAAAEAA VAFNSASESA PRNSGRSSDI KKRERRKPRT PPPPLSNENA  180
AATSSDRLSA VISSSDIKLG EASVDLSGQR NATANLSSVC PTTEGLGDSV IEEDFFESSS  240
LYMNLAEALL LPPPPLFSNI EVEEQKLEGG FLWTDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-17521141173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162168RERRKPR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABJ63e-77D5ABJ6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.18e-34ERF family protein