PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026875-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 254aa    MW: 27904 Da    PI: 4.6047
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026875-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-194795355
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr+++ +g+Wv+eIr+p++   + r++lg+f+t+e+Aa+a++ a+ +l+g
  PSME_00026875-RA 47 YRGVRRRR-WGKWVSEIREPKK---KSRIWLGSFDTPEMAARAYDVAAFYLKG 95
                      9****777.**********854...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-134595IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3046105IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2046105IPR016177DNA-binding domain
SMARTSM003805.0E-3746110IPR001471AP2/ERF domain
PROSITE profilePS5103224.02646104IPR001471AP2/ERF domain
PRINTSPR003672.4E-104758IPR001471AP2/ERF domain
CDDcd000181.82E-3247106No hitNo description
PRINTSPR003672.4E-106985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDNGPSFVTS ASSSVEVEGG IKGIQKQDEA APSPSQESTL KRRTPAYRGV RRRRWGKWVS  60
EIREPKKKSR IWLGSFDTPE MAARAYDVAA FYLKGKKHAS LNFPELIDQL PQPVSLSPRD  120
IQAAAAEAAF AFNSGISGIQ SSDASKQEMR RPRNEHEGTF FSDQLSAVIS SDLKLETASI  180
ELSGQTNATN SSSLCSTTGL GESVIEDDLF ESSNLYTNLA EALMLPPPSL FTNTEAEVEE  240
QKLEEEIGFL WSDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-16471051573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABJ61e-80D5ABJ6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.19e-28ERF family protein