PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026876-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 276aa    MW: 30355.8 Da    PI: 5.4935
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026876-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.1e-1960108355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+Wv+eIr+p++   ++r++lg+f+t+e+Aa+a++ a  +l+g
  PSME_00026876-RA  60 YRGVRRRR-WGKWVSEIREPRK---KRRIWLGSFDTPEMAARAYDVATFYLKG 108
                       9****777.**********843...6********************9988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-1358108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-2959118IPR001471AP2/ERF domain
PROSITE profilePS5103223.89459117IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-2059118IPR016177DNA-binding domain
SMARTSM003804.3E-3459123IPR001471AP2/ERF domain
PRINTSPR003674.4E-106071IPR001471AP2/ERF domain
CDDcd000182.13E-3060119No hitNo description
PRINTSPR003674.4E-108298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDNGVSFAPE SMLTSSIGTE ASSKSASEAR GRIKRIQKQD EAAPSPSEES RPLKLQNPAY  60
RGVRRRRWGK WVSEIREPRK KRRIWLGSFD TPEMAARAYD VATFYLKGKN RAFLNFPELI  120
DHLPQPASLS PSHIQAAAAE AAFAFNSATE IAGNSERRPS VVNKQERRRT RNSPVSNEHA  180
GTNSSDQLSA GSSPDLKLET VSVELSGQTN STNSSSACPI TQGLGESVIG DDLFESSNLY  240
ANLAEALMLP PPPLFTIPEV EMEEQILEEG FLWSDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1650118573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12836ARGRIKRIQ
26482RRRWGKWVSEIREPRKKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABJ61e-83D5ABJ6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.11e-23ERF family protein