PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026937-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family AP2
Protein Properties Length: 1651aa    MW: 183590 Da    PI: 8.7049
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026937-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.63.1e-13627676155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s++ GVr ++ +g + AeIr p       kr +lg++ t+e Aa+a++ a++k++g
  PSME_00026937-RA 627 SRFVGVRKRP-WGAYGAEIRTP-----EgKRLWLGTYTTEEAAAQAYDDAARKFKG 676
                       6899******.**********8.....55***********************9987 PP
2AP223.21.7e-079631005551
               AP2    5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51  
                        GVr  + +gr++A+++d   ++++k++++g +++  eAa+a++  + 
  PSME_00026937-RA  963 GVRKTS-SGRYEASLYD---RNRKKKVYVGMYDSMIEAARARDLKAI 1005
                        9*9766.8******777...4456*******************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138913.8E-13197259IPR025927Potential DNA-binding domain
SuperFamilySSF541712.62E-15627684IPR016177DNA-binding domain
PfamPF008472.0E-7627676IPR001471AP2/ERF domain
CDDcd000182.03E-13627683No hitNo description
PROSITE profilePS5103221.153628684IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-23628685IPR001471AP2/ERF domain
SMARTSM003801.4E-25628690IPR001471AP2/ERF domain
PRINTSPR003673.6E-5629640IPR001471AP2/ERF domain
PRINTSPR003673.6E-5650666IPR001471AP2/ERF domain
CDDcd000181.04E-109591018No hitNo description
SuperFamilySSF541712.35E-89601016IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-109601017IPR001471AP2/ERF domain
SMARTSM003802.6E-59601022IPR001471AP2/ERF domain
PROSITE profilePS5103210.8769601025IPR001471AP2/ERF domain
SMARTSM003808.9E-614171479IPR001471AP2/ERF domain
PROSITE profilePS5103211.03414171473IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-1114181473IPR001471AP2/ERF domain
CDDcd000189.38E-1014181475No hitNo description
SuperFamilySSF541711.31E-914181474IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1651 aa     Download sequence    Send to blast
MHIFRKGGTL VNCFKGKREK KTSVGYRRYR TWQEKQSRKA KTSDKADLKV GRYKIGEYEH  60
EVKREACSLT FDTIHNDKTF TAIQEQSGNH PSVPFFGSKE ASSSILGLTT AQHDNCSSCR  120
KTQETPLGLA KVIVDRQLND VGSQQTDSAL LFQKTGLSGS EKENSRINLS SCHYPLSSIF  180
GVEHNITGGR QYAASFCQSS EEKCSQYVFG GFRFCMLHIL EDPSSPYKQC DFIAPGSGQR  240
CRFAVSLSIA DTRFCQIHKQ MRMTESMLED IIHKENPYCG NMSLLVMAST VAHHDLEFFD  300
PLKMLEPIET NLTDHSGGQS SLPKILACPP AAIFDVLPVS VHYGQKDQVS GDNKQPAQCF  360
PVRRKTGHQR SGIVDNVQSK QKMAEAYNSH VQHDVNVSVS RKTMKSGRGN YSSTGTNFIK  420
RKRDRYVPVA ADYVVSGIEH GGKSFAGIAE CKVFSSMNKS ESLKKGLCIK GIPSKKETFE  480
RGKSCRNGTA GSPRQILSEA TCQVYEKPNR IPLNAPFFGL SAKRRYSLFH AVSSLVELGP  540
IDLTKVGLMW TPAKLLQCSG KDSSAEHLDQ VRLTPIIDLG ELDITTMSLK CPVREPRRST  600
GILKKQKQRS DSKESIPKGH GRRVSFSRFV GVRKRPWGAY GAEIRTPEGK RLWLGTYTTE  660
EAAAQAYDDA ARKFKGKGAV TNFSKESGVD SLSEAPLRSL REQESMFREA PKRRRSSNSK  720
KRDEDQLLPD EKAAKNLWDL TAPGRGPPKL LDGDSSSMFG FNATTNYINM HTIGSGGHLS  780
SPVSRFDNDE VGDQTLISHE LEGSAAQEQH IQELCGEKES KLTERFARVY SKKQKLRKTV  840
DLNSSTLSMT VPEGILGEEE TPDSFLCGSN ERKKFRCIST AVAGIPDTDN PAEISADKDK  900
QADCELESRY YRNDLAASGT ELGEHFRDEI SQAKRATDSE NNFSSPEQNV SLGNVENVAH  960
FFGVRKTSSG RYEASLYDRN RKKKVYVGMY DSMIEAARAR DLKAIDLGAA SVLNFPELQE  1020
KTNLQHETDQ VDSASLKNLL KVQSAMQQLS VKAEKHANVT PQKVIKRKPR NFQRLPTAKR  1080
SKVIDHSAGN NDKASGLYKA KFLNFEEPGY AVIQTEPEVK DANTGCPDSL SLGYLEIEKN  1140
GQDRGNTYTS RGKKKKKSVS EYVVLSHSEI SKNHQRQKLS ESGDHNTYMP KQDLVYGFDG  1200
EQYIESDYSR VYRTTSKRRA MQSRSGCGHV NPVQEEEKLG IQNGNFEDTG GCNLNDRNNL  1260
EGRNLICSGQ NENGKDQSSH LNMHSAIANF QNADKVDGDV SYSTAVKTAE VRFPVETQEG  1320
EKGPYNHCIQ DTNSGIFPTM LPIAELKKSR SARVFSSKSL HLEADCSWQE TGQKTTLPIK  1380
TSEKCSTRSQ RLGKSARSRR FRHKAASKRS SFTRHVAYRG VYSNGKKFQS IYYNPVSKKH  1440
TYLGTFCTGE DAARAYDQVA YGQLGESAKI NFPPDCLEPM ESEETKQKNS INSQLEQMSG  1500
SQGNVAVGSA LNDAFRSTQN LEDFERETKL LEANEALSDC NNDYSQQTKL NISCQASTTD  1560
TFGNKAIIPN DNLVLGCLAE NSDGKLDRPS RMMSLQLETE VKDTYSASEH PEIGDQNGLS  1620
ADPAFEALGE ILRASEVLDI PKDTLPHVPR C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13619691579Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1100640.0BT110064.1 Picea glauca clone GQ03215_K12 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.14e-10ethylene responsive element binding factor 4