PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00027017-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family TALE
Protein Properties Length: 831aa    MW: 90056.4 Da    PI: 6.7262
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00027017-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.13.5e-095115481954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  PSME_00027017-RA 511 FEHflHPYPKDADKHMLARQTGLTRNQVSNWFINARVR 548
                       554459******************************88 PP
2BELL127.16.6e-41374445172
              BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       erqelq+kkakL+ +l+eVd+rY+qy++q+q+v+ssFea+ag+g+ak YtslAl++iSrhFrcL+dai++qi
  PSME_00027017-RA 374 ERQELQMKKAKLVAMLDEVDQRYRQYYHQMQIVVSSFEAAAGYGAAKTYTSLALQTISRHFRCLRDAISGQI 445
                       79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.4E-64287443IPR006563POX domain
PfamPF075264.4E-52292442IPR006563POX domain
PROSITE profilePS5007112.179489552IPR001356Homeobox domain
CDDcd000864.16E-12492553No hitNo description
SMARTSM003898.1E-9492556IPR001356Homeobox domain
SuperFamilySSF466891.03E-16494559IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28495559IPR009057Homeodomain-like
PfamPF059204.8E-18509548IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
MATYFPGSNI QADNMQTLYL MNPGYAGYTD ATTSGNMVLL NHSVGNTLPA NNLAGGQPSQ  60
QFIGIPLPNA QLPQRSSLGV MGNSPTAQQD INSNLLASRI GGHPYNVWRN GGNELTFMQT  120
TDATGSSQSL SGHLNNSGNM GHQPVAEISQ MGLRRASMSS IQEQQSGMLP SGLSLQLEHS  180
HGSTGHGQGL SLSLSPQQPS TVQMSSFQNQ PTDSDINCPG ISATSEENMS RTDRSTSKWA  240
GSLSAFRASS RDGMLGSGFS NNGFSGNLLA PGANKQMHLD SSSTGPAGLP NVLIGSKYLK  300
AAQQLLDEVV NVGKGVKPDS AKHQKSQSWM GTTANKENGG AEGGGKDGAA AAPTWRSTSG  360
QETNDRPSEL SPAERQELQM KKAKLVAMLD EVDQRYRQYY HQMQIVVSSF EAAAGYGAAK  420
TYTSLALQTI SRHFRCLRDA ISGQIRLTSK SLGEEDSTVS GKGETSRLRF VDQQLRQQRA  480
LQQLGMIQQH AWRPQRGLPE RSVSVLRAWL FEHFLHPYPK DADKHMLARQ TGLTRNQVSN  540
WFINARVRLW KPMVEEMYME ETKEVEAEHG SNEKTGMESG EKKEDVLSKE GAAGNNGNGH  600
EQQSGKPTKL DNIAQDGGAD EKPIGAPKSE NASNLINVRN QSFGMGGTSD SQIFNETENE  660
GVRQGQLKKA RNGTQECTSL LSPNMSIEVD LKSDETNSGE FGDHKFSDER QNTEDYSFVH  720
NAMVHPDNSG SFGSYQIGDL GRYGHESFTP RFSGSGGVSL TLGLQRTDGL SLQGTQQNYM  780
SSQSLALGRR HDLGGNSSDY CNIETSTAHP ANIYENLNIQ PRKCFATQLM H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-16498555158Homeobox protein Meis1
4xrs_B4e-16498555158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1042770.0BT104277.1 Picea glauca clone GQ02808_H08 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RM180.0A0A0C9RM18_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_11489_4138 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.33e-87BEL1-like homeodomain 1