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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PSME_00027028-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | LSD | ||||||||
| Protein Properties | Length: 207aa MW: 22638.2 Da PI: 8.2016 | ||||||||
| Description | LSD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-LSD1 | 31.9 | 2.2e-10 | 37 | 61 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCrtlL YP G p+V Ca+C+tV
PSME_00027028-RA 37 CSGCRTLLVYPQGVPNVYCAVCNTV 61
************************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| TIGRFAMs | TIGR01053 | 9.8E-13 | 34 | 64 | IPR005735 | Zinc finger, LSD1-type |
| Pfam | PF06943 | 4.0E-10 | 37 | 61 | IPR005735 | Zinc finger, LSD1-type |
| Gene3D | G3DSA:3.30.470.20 | 1.2E-13 | 111 | 191 | IPR013816 | ATP-grasp fold, subdomain 2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0005524 | Molecular Function | ATP binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 207 aa Download sequence Send to blast |
MDGAIKPGWG TMPLHMNPYP PQQKPLPPPN RQGQLVCSGC RTLLVYPQGV PNVYCAVCNT 60 VTAVPPGAEM AQLICGSCHT LLITVNLAME ANQVAHRLMM KTPAQWKQGT AYAFVIHTTD 120 PSTGDSSEIY AEIVKGFGET LVGAYPGRAM SFVTKKSELN QVKVFGYPYK PIGFFIRQSI 180 IFRSDPNGED LDGYDRCQGH VCRLGPF |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | BT116286 | 4e-94 | BT116286.1 Picea glauca clone GQ03715_F15 mRNA sequence. | |||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G32540.3 | 8e-26 | lsd one like 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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