PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00027076-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NF-YA
Protein Properties Length: 192aa    MW: 21384.9 Da    PI: 10.3528
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00027076-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.87.7e-33965158
         CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                      +ep+YVNaKQy++Il+RRq Rak+e+ekk+ +k rkpylheSRh hA+rR+Rg+gGrF
  PSME_00027076-RA  9 EEPVYVNAKQYHGILRRRQLRAKAESEKKV-IKVRKPYLHESRHLHAMRRARGCGGRF 65
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-37768IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.184868IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.1E-281065IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.1E-241133IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068601333IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.1E-244265IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MPLQIETEEE PVYVNAKQYH GILRRRQLRA KAESEKKVIK VRKPYLHESR HLHAMRRARG  60
CGGRFLNTRK MESSKVNTDN GKGLEGPPVQ DGSSSGSEGF LSQDGNLRIL QEVQGTTSRM  120
SSSKVTSMEK AYTDGKGYLY SRNNGVYHSG RLQQHFHLSA FHHISSGSDK GESGDARGLV  180
SNGSQQRAVE IL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-21974267NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7653890.0KF765389.1 Larix kaempferi NFYA4 (NFYA4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006838331.13e-47nuclear transcription factor Y subunit A-1
TrEMBLA0A023R6U31e-132A0A023R6U3_9SPER; NFYA4
STRINGERN009001e-46(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.17e-35nuclear factor Y, subunit A7