PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00027081-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 427aa    MW: 49143.5 Da    PI: 8.859
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00027081-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox474.4e-1559116254
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54 
                       ++R+++t+eq ++L   Fe+   +ps++e++  +++l    +++e++V++WF+Nr+++
  PSME_00027081-RA  59 KPRWKPTEEQKRILIPKFESgMVKPSRHEIKTVTAQLqefgQVEEANVFNWFCNRKYR 116
                       89*****************99***********************************98 PP
2Homeobox45.81.1e-14263320254
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54 
                       ++R++ tkeq ++L   Fe    +ps++e++ ++++l    +++e++V++WF Nr+++
  PSME_00027081-RA 263 KPRWKATKEQKRILIPKFETgMVKPSRHEIKTITAQLqefgQVEEANVFYWFRNRKYR 320
                       89*****************99***********************************98 PP
3Wus_type_Homeobox72.28.2e-2458116260
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60 
                        +++RW Pt+eQ +iL   ++sG++ P+++ei+ +ta+L+e+G++e++NVf+WF Nrk R
   PSME_00027081-RA  58 TKPRWKPTEEQKRILIPKFESGMVKPSRHEIKTVTAQLQEFGQVEEANVFNWFCNRKYR 116
                        689******************************************************88 PP
4Wus_type_Homeobox71.81.2e-23262320260
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60 
                        +++RW  t+eQ +iL   +++G++ P+++ei+ ita+L+e+G++e++NVfyWF Nrk R
   PSME_00027081-RA 262 TKPRWKATKEQKRILIPKFETGMVKPSRHEIKTITAQLQEFGQVEEANVFYWFRNRKYR 320
                        689******************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.21655120IPR001356Homeobox domain
SuperFamilySSF466891.54E-955120IPR009057Homeodomain-like
SMARTSM003892.3E-457124IPR001356Homeobox domain
CDDcd000861.07E-459116No hitNo description
PfamPF000461.1E-1259116IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.1E-659116IPR009057Homeodomain-like
PROSITE profilePS500719.782259324IPR001356Homeobox domain
SuperFamilySSF466891.84E-9260324IPR009057Homeodomain-like
SMARTSM003898.2E-4261328IPR001356Homeobox domain
CDDcd000863.12E-4263320No hitNo description
PfamPF000463.0E-12263320IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-5263320IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MDNMKSKPRQ SWTSMFKVKP STSDKQGYGS SNSSAISVKR PCYQGTSSAN EERSWHKTKP  60
RWKPTEEQKR ILIPKFESGM VKPSRHEIKT VTAQLQEFGQ VEEANVFNWF CNRKYRIFNR  120
VERTEKNTKA IINVANNTAD SLYNTGETYS SYFHAGSRNC SRSGSFSYVH LIPVLINKIP  180
VEVPVGSINV RDAFGENKVL LDSTGQPILV NEWGFTLECL QQGAEYYVED FHMQMNEEMS  240
NDQCSSMQAV ATAAGERSWH KTKPRWKATK EQKRILIPKF ETGMVKPSRH EIKTITAQLQ  300
EFGQVEEANV FYWFRNRKYR IFNRVERTEK NTKAIINVAK NTADSLYNTG ETYSSYEDFH  360
MQMNEEMRTG GSFSYEHLIT VLINKIPIEV PVGSINVRDA FYENAVLLHS AGEPVLVNEW  420
AFTMECL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5LMH95e-70D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.14e-19homeobox-3